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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
WGBS
5
ATAC-seq
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
400
tsv
43
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
487
Homo sapiens
Biosample type
486
tissue
2
primary cell
Organ
889
pancreas
788
liver
665
connective tissue
488
adipose tissue
472
epithelium
354
heart
352
kidney
283
brain
vasculature
194
blood vessel
150
bone element
122
limb
106
artery
95
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
26
eye
24
spleen
22
vein
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
0
stomach
Project
488
AMP
Genome assembly (visualization)
425
hg19
424
GRCh38
Lab
488
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
month_released!
February, 2023
organ_slims!
vasculature
BIOSAMPLE
ASSAY
488 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
2
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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