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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
34
DNase-seq
9
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
WGBS
2
ATAC-seq
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
Assay category
119
DNA binding
45
DNA accessibility
9
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
57
transcription factor
40
histone
40
histone modification
24
broad histone mark
20
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
43
June, 2019
34
December, 2018
26
August, 2017
25
January, 2019
24
November, 2018
10
July, 2019
8
January, 2021
7
May, 2019
4
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
October, 2017
Available data
140
bam
138
bigWig
127
bed narrowPeak
114
bigBed narrowPeak
85
fastq
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
15
tagAlign
8
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
187
Homo sapiens
Biosample type
104
tissue
61
cell line
22
primary cell
Organ
940
pancreas
788
liver
678
connective tissue
524
epithelium
488
adipose tissue
390
heart
352
kidney
268
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
23
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
179
AMP
8
T1D
Genome assembly (visualization)
141
hg19
122
GRCh38
Lab
179
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
assay_title!
pCHi-C
month_released!
October, 2017
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
WGBS
ATAC-seq
small RNA-seq
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
spleen
20
1
2
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
+ See 4 more…
cell line
GM12878
60
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
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