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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
pCHi-C
14
total RNA-seq
8
Hi-C
4
ATAC-seq
3
ChIP-seq
Assay category
14
Transcription
8
3D chromatin structure
4
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
400
November, 2017
382
May, 2021
354
August, 2017
340
May, 2020
312
August, 2021
262
October, 2019
261
February, 2021
210
June, 2019
200
May, 2022
169
February, 2023
168
July, 2018
94
December, 2017
84
July, 2019
80
April, 2019
78
November, 2018
73
September, 2018
70
May, 2019
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
29
March, 2020
28
December, 2018
23
January, 2019
21
October, 2017
20
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
19
bigWig
15
bam
14
tsv
8
bedpe bed3+
8
hic
3
bed narrowPeak
Organism
29
Homo sapiens
Biosample type
18
tissue
7
cell line
4
in vitro differentiated cells
Organ
13
pancreas
6
epithelium
4
heart
4
musculature of body
3
blood vessel
vasculature
2
liver
1
vein
Project
22
AMP
7
T1D
Genome assembly (visualization)
27
hg19
15
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_title!
pCHi-C
organ_slims!
adipose tissue
spleen
vasculature
BIOSAMPLE
ASSAY
29 results
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total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
2
2
heart left ventricle
1
1
heart right ventricle
1
1
liver
1
1
+ See 1 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
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