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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
8
DNase-seq
5
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
184
DNA binding
9
DNA accessibility
5
DNA methylation
1
Transcription
Target of assay
92
histone
92
histone modification
66
transcription factor
58
broad histone mark
34
narrow histone mark
26
RNA binding protein
26
control
16
recombinant protein
7
chromatin remodeller
Date released
713
February, 2021
411
August, 2017
406
November, 2017
382
May, 2021
340
May, 2020
319
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
61
November, 2019
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
32
March, 2020
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
198
bam
171
bigWig
166
bed narrowPeak
166
bigBed narrowPeak
79
fastq
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
csv
Organism
199
Homo sapiens
Biosample type
132
tissue
61
cell line
6
primary cell
Organ
53
liver
50
blood vessel
50
vasculature
30
brain
21
heart
15
blood
15
bodily fluid
9
pancreas
spleen
7
limb
7
musculature of body
5
artery
5
epithelium
5
kidney
1
adipose tissue
1
connective tissue
Project
199
AMP
Genome assembly (visualization)
169
GRCh38
164
hg19
Lab
199
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
pCHi-C
month_released!
September, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
199 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 11 more…
cell line
HepG2
45
1
GM12878
15
primary cell
kidney epithelial cell
5
pancreatic cell
1
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