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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
54
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
681
February, 2021
382
August, 2017
356
May, 2021
340
May, 2020
334
November, 2017
313
August, 2021
268
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
80
April, 2019
75
December, 2017
74
October, 2018
72
November, 2018
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
26
March, 2020
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2022
1
October, 2022
Available data
72
fastq
71
bam
65
bigWig
58
bed narrowPeak
58
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
72
Homo sapiens
Biosample type
45
cell line
26
tissue
1
primary cell
Organ
37
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
72
AMP
Genome assembly (visualization)
64
GRCh38
58
hg19
Lab
72
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
pCHi-C
organ_slims!
epithelium
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
29
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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