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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
1016
histone modification
1015
histone
513
narrow histone mark
501
broad histone mark
463
transcription factor
337
control
104
RNA binding protein
89
recombinant protein
26
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
17
November, 2017
8
November, 2018
3
August, 2017
3
December, 2017
Available data
31
bam
31
bed narrowPeak
31
bigWig
31
fastq
29
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
Organism
31
Homo sapiens
Biosample type
22
cell line
5
tissue
3
in vitro differentiated cells
1
primary cell
Organ
25
liver
blood
10
bodily fluid
3
spleen
2
connective tissue
1
epithelium
Project
31
AMP
Genome assembly (visualization)
31
hg19
29
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
assay_title!
pCHi-C
organ_slims!
blood
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
cell line
HepG2
22
tissue
spleen
3
liver
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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