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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
73
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
6
ATAC-seq
6
WGBS
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
RRBS
Assay category
411
Transcription
73
DNA binding
18
DNA accessibility
7
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
19
April, 2020
14
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
443
bam
426
bigWig
401
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed bedMethyl
3
bed broadPeak
3
bigBed bedMethyl
2
bigBed broadPeak
Organism
508
Homo sapiens
Biosample type
507
tissue
3
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
491
AMP
19
LungMap
Genome assembly (visualization)
428
hg19
425
GRCh38
Lab
491
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
510 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
lung
10
9
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primary cell
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
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