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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
84
RNA microarray
57
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
120
Transcription
61
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
216
February, 2021
43
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
168
bam
143
bigWig
116
tsv
88
txt
82
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
299
Homo sapiens
Biosample type
231
tissue
66
cell line
2
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
299
AMP
Genome assembly (visualization)
194
GRCh38
163
hg19
Lab
299
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
assay_title!
pCHi-C
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
299 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
bone element
84
bone tissue
58
coronary artery
1
36
5
2
tibial artery
1
1
23
2
acetabular part of hip bone
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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