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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
45
ATAC-seq
34
ChIP-seq
11
single cell RNA-seq
10
snATAC-seq
4
DNase-seq
pCHi-C
Assay category
66
Transcription
59
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
19
April, 2020
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
101
bam
84
bigWig
74
bed narrowPeak
57
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
158
Homo sapiens
Biosample type
92
tissue
66
cell line
1
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
140
AMP
19
LungMap
Genome assembly (visualization)
127
GRCh38
92
hg19
Lab
140
AMP-T2D consortium
19
Xin Sun, UCSD
assay_title!
pCHi-C
organ_slims!
epithelium
ureter
BIOSAMPLE
ASSAY
159 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
lung
9
10
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the coronary artery
1
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