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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
59
ChIP-seq
13
ATAC-seq
8
snATAC-seq
pCHi-C
Assay category
62
Transcription
59
DNA binding
21
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
narrow histone mark
Date released
150
February, 2021
27
December, 2018
17
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
Available data
125
bam
112
bigWig
88
txt
61
bed narrowPeak
59
fastq
58
tsv
53
bigBed narrowPeak
4
bed bed3
Organism
226
Homo sapiens
Biosample type
158
tissue
60
cell line
8
primary cell
Organ
872
pancreas
728
liver
646
connective tissue
477
adipose tissue
475
epithelium
350
heart
337
kidney
209
vasculature
204
blood vessel
167
brain
158
bone element
135
artery
107
limb
82
musculature of body
68
blood
68
bodily fluid
54
eye
35
nerve
29
embryo
22
spleen
19
lung
18
ureter
16
skeleton
16
vein
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
218
AMP
8
T1D
Genome assembly (visualization)
124
hg19
119
GRCh38
Lab
218
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
assay_title!
pCHi-C
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
226 results
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Clear Filters
RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
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