Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • pCHi-C
  • 1FAIRE-seq
Assay category
  • 218DNA binding
  • 37DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • 31control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 86October, 2019
  • 30June, 2019
  • 28May, 2019
  • 18July, 2019
  • 16October, 2017
  • 12February, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 24tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 284Homo sapiens
Biosample type
  • 263tissue
  • 21primary cell
Organ
  • 945pancreas
  • 788liver
  • 679connective tissue
  • 524epithelium
  • 489adipose tissue
  • 390heart
  • 352kidney
  • 284brain
  • 235vasculature
  • 229blood vessel
  • 158bone element
  • 141artery
  • 122limb
  • 95musculature of body
  • 69blood
  • 69bodily fluid
  • 57eye
  • 43nerve
  • 37embryo
  • 24spleen
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pericardium
  • 2pituitary gland
  • 1lymph node
  • 1skin of body
  • 1spinal cord
Project
  • 284AMP
Genome assembly (visualization)
  • 217GRCh38
  • 164hg19
Lab
  • 284AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
assay_title!
  • pCHi-C
BIOSAMPLE
ASSAY

284 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain2014111
layer of hippocampus23
caudate nucleus1511
substantia nigra161
temporal lobe1511
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell311
brain pericyte11
cerebellar granule cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego