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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 153ChIP-seq
  • 25ATAC-seq
  • 9DNase-seq
  • 6WGBS
  • pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 153DNA binding
  • 34DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 78histone
  • 78histone modification
  • 44broad histone mark
  • 40transcription factor
  • 35control
  • 33narrow histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 454February, 2021
  • 125August, 2017
  • 23October, 2018
  • 18July, 2019
  • 18June, 2019
  • 14February, 2023
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 1January, 2018
  • 1May, 2021
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 592bam
  • 570bigWig
  • 476tsv
  • 100fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 26bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1hdf5
Organism
  • 678Homo sapiens
Biosample type
  • 546tissue
  • 96in vitro differentiated cells
  • 37primary cell
Organ
  • 945pancreas
  • 788liver
  • 679connective tissue
  • 524epithelium
  • 489adipose tissue
  • 390heart
  • 352kidney
  • 284brain
  • 235vasculature
  • 229blood vessel
  • 158bone element
  • 141artery
  • 122limb
  • 95musculature of body
  • 69blood
  • 69bodily fluid
  • 57eye
  • 43nerve
  • 37embryo
  • 24spleen
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pericardium
  • 2pituitary gland
  • 1lymph node
  • 1skin of body
  • 1spinal cord
Project
  • 679AMP
Genome assembly (visualization)
  • 588hg19
  • 566GRCh38
Lab
  • 675AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 18inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
assay_title!
  • pCHi-C
BIOSAMPLE
ASSAY

679 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue382233
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad511121
in vitro differentiated cells
adipocyte567811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
cardiac fibroblast531
osteoblast521
mesenchymal stem cell7
pancreatic stellate cell4
brain pericyte11
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