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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
pCHi-C
Assay category
13
DNA accessibility
11
DNA binding
9
Transcription
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
narrow histone mark
2
control
Date released
19
April, 2020
15
October, 2019
1
March, 2020
Available data
14
bam
10
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
34
Homo sapiens
Biosample type
19
tissue
16
primary cell
Organ
872
pancreas
728
liver
646
connective tissue
477
adipose tissue
475
epithelium
350
heart
337
kidney
209
vasculature
204
blood vessel
167
brain
158
bone element
135
artery
107
limb
82
musculature of body
68
blood
68
bodily fluid
54
eye
35
nerve
29
embryo
22
spleen
19
lung
18
ureter
16
skeleton
16
vein
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
19
LungMap
16
AMP
Genome assembly (visualization)
12
hg19
7
GRCh38
Lab
19
Xin Sun, UCSD
16
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
pCHi-C
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
lung
10
9
primary cell
endothelial cell of umbilical vein
11
2
2
1
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