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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
35
DNase-seq
11
total RNA-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
74
DNA binding
38
DNA accessibility
14
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
57
histone
57
histone modification
36
broad histone mark
21
narrow histone mark
17
control
Date released
43
June, 2019
42
October, 2019
26
August, 2017
10
July, 2019
7
May, 2019
4
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
99
bam
99
bigWig
87
bed narrowPeak
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
13
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
138
Homo sapiens
Biosample type
124
tissue
14
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
138
AMP
Genome assembly (visualization)
104
hg19
84
GRCh38
Lab
138
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
organ_slims!
ureter
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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