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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • pCHi-C
Assay category
  • 102DNA binding
  • 67Transcription
  • 58DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 6November, 2017
  • 3February, 2020
  • 3March, 2020
Available data
  • 185bam
  • 155bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • 67tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 235Homo sapiens
Biosample type
  • 132tissue
  • 66cell line
  • 37primary cell
Organ
  • 945pancreas
  • 788liver
  • 679connective tissue
  • 524epithelium
  • 489adipose tissue
  • 390heart
  • 352kidney
  • 284brain
  • 235vasculature
  • 229blood vessel
  • 158bone element
  • 141artery
  • 122limb
  • 95musculature of body
  • 69blood
  • 69bodily fluid
  • 57eye
  • 43nerve
  • 37embryo
  • 24spleen
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pericardium
  • 2pituitary gland
  • 1lymph node
  • 1skin of body
  • 1spinal cord
Project
  • 235AMP
Genome assembly (visualization)
  • 191GRCh38
  • 165hg19
Lab
  • 235AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
assay_title!
  • pCHi-C
BIOSAMPLE
ASSAY

235 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
tissue
coronary artery51362
tibial artery23112
aorta131412
ascending aorta1621
thoracic aorta1621
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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