Experiment Matrix

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BIOSAMPLE

	ASSAY
2928 results Clear Filters	ChIP-seq	ATAC-seq	DNase-seq	snATAC-seq	WGBS	total RNA-seq	Hi-C	RRBS	FAIRE-seq	GRO-seq	Capture-C	CRISPR genome editing followed by DNA sequencing	single cell RNA-seq	HiChIP	CRISPR RNA-seq	CRISPR genome editing followed by sgRNA sequencing	CRISPRi RNA-seq	DNAme array	MPRA	RNA microarray	...and 3 more
tissue
liver	145	20	2		3		1	1
islet of Langerhans	71	68	1	7			3	1	1
kidney	27	75	13	6			1	1	1
heart left ventricle	35	2	3		4		1	1
body of pancreas	35	4	4		2
coronary artery	5	36	2
tibial nerve	35	1	2			4
left cardiac atrium	40		1
subcutaneous abdominal adipose tissue	36				3
brain	20	1	14					1
heart	14		18		1		1
skeletal muscle tissue	22	1		2				4
pancreas	16		2	4	2		1	1	1
tibial artery	23	1	2
spleen	20	1	1		2
layer of hippocampus	23
muscle of leg	7		13		1
retina		15	3
ascending aorta	16		1
heart right ventricle	13		1		2		1
muscle of arm			17
thoracic aorta	16	1
aorta	13				2		1
caudate nucleus	15		1
endocrine pancreas	16
substantia nigra	16
angular gyrus	15
temporal lobe	15
cingulate gyrus	14
middle frontal area 46	14
omental fat pad	11	1	2
right lobe of liver	10	1	2		1
subcutaneous adipose tissue	12	1																		1
right atrium auricular region	10	1	2
germinal matrix	12
pigmented layer of retina		12
white adipose tissue	12
renal cortex interstitium			11
lung				10
renal pelvis			10
right kidney			10
left kidney			9
adipose tissue	2	3			3
right cardiac atrium	6				1
cerebellum (Hemisphere)	4	1	1
gastrocnemius medialis							4
left renal cortex interstitium			4
left renal pelvis			4
right renal pelvis			4
superior frontal gyrus	4
central medial thalamic nucleus	3
frontal cortex			2						1
middle frontal gyrus	2		1
middle temporal gyrus	3
putamen	2		1
right renal cortex interstitium			3
anterior cingulate gyrus	2
gyrus rectus	2
medial globus pallidus	2
occipital pole	2
pons	1		1
posterior cingulate gyrus	2
precuneus cortex	2
primary motor cortex	2
psoas muscle							2
secondary auditory cortex	2
superior parietal cortex	2
supramarginal gyrus	2
white matter	2
Ammon's horn			1
acetabular part of hip bone		1
adipose tissue(adipose white tissue)		1
agranular insular cortex	1
amygdala	1
arcuate nucleus of hypothalamus	1
bed nucleus of stria terminalis	1
body of caudate nucleus	1
brodmann area 43	1
cerebellar cortex			1
claustrum of brain	1
cuneus	1
dentate nucleus	1
distal epiphysis		1
distal epiphysis of femur		1
distal epiphysis of humerus		1
distal epiphysis of tibia		1
dorsal lateral geniculate nucleus	1
dorsal plus ventral thalamus	1
external globus pallidus	1
fastigial nucleus	1
forelimb muscle			1
frontal pole	1
globus pallidus			1
head of caudate nucleus	1
hindlimb muscle			1
hippocampal gyrus	1
hypothalamus	1
ilium		1
inferior frontal gyrus	1
inferior parietal cortex			1
inferior temporal gyrus	1
insular gyrus	1
ischium		1
lateral hypothalamic area	1
lateral occipital gyrus	1
lateral septal nucleus	1
lingual gyrus	1
locus coeruleus	1
mammillary body	1
medial dorsal nucleus of thalamus	1
medial geniculate nucleus	1
medial segment of precentral gyrus	1
medulla oblongata			1
midbrain			1
midbrain tectum	1
myelencephalon	1
nucleus accumbens	1
occipital lobe			1
olivary body	1
orbital gyrus	1
paraterminal gyrus	1
pericardium								1
pineal body	1
piriform cortex	1
pituitary gland	1
planum polare	1
planum temporale	1
postcentral gyrus	1
posterior cingulate cortex		1
primary somatosensory cortex	1
proximal epiphysis		1
proximal epiphysis of femur		1
proximal epiphysis of humerus		1
proximal epiphysis of tibia		1
pubis		1
pulvinar nucleus	1
raphe nuclei	1
red nucleus	1
subiculum	1
substantia nigra pars reticulata	1
subthalamic nucleus	1
superior occipital gyrus	1
superior temporal gyrus			1
suprachiasmatic nucleus	1
temporal pole	1
transverse temporal gyrus	1
uncus of parahippocampal gyrus	1
ventral anterior nucleus of thalamus	1
primary cell
monocyte	85	15				2												1
pancreatic alpha cell	13	35			31		1
pancreatic beta cell	13	23			16		1
Langerhans cell				48
CD8-positive, alpha-beta T cell	33	2				2
naive thymus-derived CD4-positive, alpha-beta T cell	2	22
pancreatic endocrine cell	23
CD4-positive, alpha-beta memory T cell		22
endothelial cell of umbilical vein	17		2				2		1
skeletal muscle myoblast	15		2			1		1
pancreatic acinar cell	8	9					1
pancreatic ductal cell	13	4
epithelial cell of proximal tubule	10		1			1		1
macrophage		11
cardiac fibroblast	5		3					1
skeletal muscle satellite cell	8					1
kidney epithelial cell	5		1			1		1
peripheral blood mononuclear cell				8
mesenchymal stem cell	7
hepatocyte	4		1					1
astrocyte of the cerebellum	3		1				1
brain microvascular endothelial cell	3		1				1
cardiac muscle cell	3		1					1
choroid plexus epithelial cell	3		1					1
retinal pigment epithelial cell	3		1					1
B cell		2				2
T follicular helper cell		2				2
T-helper 1 cell		2				2
T-helper 17 cell		2				2
T-helper 2 cell		2				2
central memory CD8-positive, alpha-beta T cell		2				2
effector CD4-positive, alpha-beta T cell		2				2
effector T cell		2				2
effector memory CD8-positive, alpha-beta T cell		2				2
gamma-delta T cell		2				2
mature natural killer cell		2				2
memory B cell		2				2
memory T cell		2				2
memory regulatory T cell		2				2
naive B cel		2				2
naive regulatory T cell		2				2
naive thymus-derived CD8-positive, alpha-beta T cell		2				2
osteoblast		2	1			1
regulatory T cell		2				2
skeletal muscle cell	2		1					1
gabaergic neuron		3
glutamatergic neuron		3
kidney tubule cell			3
microglial cell/astrocyte		3
oligodendrocyte		3
renal cortical epithelial cell			1			1		1
brain pericyte			1				1
cerebellar granule cell													2
glomerular endothelial cell			1			1
glomerular visceral epithelial cell			2
immature natural killer cell		1				1
kidney glomerular epithelial cell			2
myeloid dendritic cell		1				1
natural killer cell		1				1
plasma cell		1				1
plasmacytoid dendritic cell		1				1
Heart fetal (cardiac muscle cell)		1
Liver fetal (hepatocyte)		1
Purkinje cell													1
astrocyte of the hippocampus			1
cardiac atrium fibroblast						1
cardiac ventricle fibroblast						1
chondrocytes							1
endothelial cell of coronary artery						1
endothelial cell of hepatic sinusoid							1
hepatic stellate cell			1
kidney capillary endothelial cell			1
mesangial cell						1
mesenchymal stem cell of adipose						1
neutrophil	1
pericardium fibroblast						1
smooth muscle cell of the brain vasculature			1
smooth muscle cell of the coronary artery						1
cell line
HepG2	378	1			1	5	2
GM12878	60	1
EndoC_BH1	15	19					1				2	3		2		1
Panc1	13		1				1
smooth muscle cell of the coronary artery	6	8
RCC 7860 HIF1a re-expression	4
RCC 7860 HIF2a over-expression	3
RCC 7860 vector	3
EndoC-BH1
iPSC derived cell line	2
MIN6																			1
glomerular visceral epithelial cell			1
in vitro differentiated cells
adipocyte	67	8	1								1
embryonic stem cell	40	6
neural progenitor cell	21	10
pancreatic endoderm	18									1
hepatocyte	15
definitive endodermal cell	8									1
primitive gut cell	8									1
Posterior foregut	5									1
Pancreatic progenitors (progenitor cell of endocrine pancreas)		5
chondrocyte		5
Hepatic endoderm	4
cardiomyocytes	3
cardiomyocytes (cardiac muscle cell)		1					2
endocrine cell	3
pancreatic PP cell	3
posterior foregut	3
cardiac precursors (cardiac muscle cell)		1					1
immature adipocyte		2
osteoblast		1									1
Progenitor cell of Hypothalamus (neural progenitor cell)		1
lymphocyte of B lineage (iPSC)							1
neuron cell of Hypothalamus (neuron)		1
preadipocyte		1
stem cell
hESC	3									1
SB Ad3.1															1		1

Experiment Matrix

Assay

Assay category

Target of assay

Date released

Available data

Organism

Biosample type

Organ

Project

Genome assembly (visualization)

Lab

Audit category:

Audit category:

Audit category:

assay_title!

replicates.library.nucleic_acid_term_name!

2928 results