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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 181ChIP-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 181DNA binding
  • 140DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 130May, 2021
  • 88May, 2020
  • 50October, 2019
  • 48August, 2021
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 33August, 2017
  • 30June, 2019
  • 25February, 2020
  • 10February, 2021
  • 9March, 2020
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 482bam
  • 467bigWig
  • 279tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 67bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 629Homo sapiens
Biosample type
  • 297primary cell
  • 222tissue
  • 110in vitro differentiated cells
Organ
  • 137pancreas
  • 81epithelium
  • 69brain
  • 54connective tissue
  • 22heart
  • 19kidney
  • 16adipose tissue
  • 15liver
  • 8bone element
  • 8musculature of body
  • 8skeleton
  • 6blood vessel
  • 6vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1spinal cord
  • 1vein
Project
  • 491AMP
  • 134T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 493hg19
  • 427GRCh38
Lab
  • 459AMP-T2D consortium
  • 150Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 47inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
assay_title!
  • pCHi-C
BIOSAMPLE
ASSAY

629 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans10221861224
liver2611
brain612
heart21411
frontal cortex2211
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell5114
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
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