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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
total RNA-seq
18
ATAC-seq
15
pCHi-C
1
DNAme array
Assay category
161
DNA binding
18
DNA accessibility
1
DNA methylation
Target of assay
139
histone
139
histone modification
76
broad histone mark
63
narrow histone mark
13
transcription factor
9
control
5
RNA binding protein
Date released
406
November, 2017
322
August, 2017
266
October, 2019
242
August, 2021
195
May, 2021
192
June, 2019
174
May, 2022
147
May, 2020
117
May, 2019
103
February, 2023
90
December, 2017
88
November, 2018
86
February, 2021
80
April, 2019
74
October, 2018
62
July, 2019
49
April, 2018
47
September, 2018
47
September, 2023
43
September, 2020
42
July, 2018
40
May, 2024
36
March, 2020
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
20
November, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
4
August, 2018
4
March, 2023
4
October, 2022
3
December, 2019
2
June, 2018
1
August, 2022
Available data
129
bed narrowPeak
124
bigWig
100
bam
87
tagAlign
Organism
195
Homo sapiens
Biosample type
149
primary cell
45
in vitro differentiated cells
1
tissue
Organ
3
epithelium
3
pancreas
1
bone element
bone marrow
1
connective tissue
1
thymus
Project
99
T1D
96
AMP
Genome assembly (visualization)
137
hg19
99
GRCh38
Lab
174
Kyle Gaulton, UCSD
21
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_title!
shRNA RNA-seq
total RNA-seq
audit.ERROR.category!
inconsistent ontology term
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
195 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
85
13
1
1
CD8-positive, alpha-beta T cell
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
3
tissue
thymus
1
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