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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
104
total RNA-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
388
DNA binding
104
Transcription
15
DNA accessibility
3
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
259
November, 2017
93
February, 2021
54
November, 2018
27
December, 2018
21
August, 2021
19
January, 2019
17
October, 2019
10
November, 2019
6
March, 2020
4
May, 2021
1
January, 2018
Available data
498
bigWig
492
bam
382
bed narrowPeak
359
fastq
341
bigBed narrowPeak
105
tsv
53
bed broadPeak
53
bigBed broadPeak
12
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
511
Homo sapiens
Biosample type
1462
tissue
511
cell line
508
primary cell
257
in vitro differentiated cells
2
stem cell
Organ
321
liver
64
artery
64
blood vessel
64
heart
64
vasculature
54
blood
54
bodily fluid
49
pancreas
46
epithelium
12
kidney
8
embryo
Project
509
AMP
2
T1D
Genome assembly (visualization)
511
hg19
448
GRCh38
Lab
498
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
54
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
shRNA RNA-seq
organ_slims!
musculature of body
target.investigated_as!
narrow histone mark
target.investigated_as!!
narrow histone mark
BIOSAMPLE
ASSAY
511 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
313
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
53
1
EndoC_BH1
7
33
3
1
H1-hESC
8
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