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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
19
histone
19
histone modification
19
transcription factor
12
broad histone mark
11
chromatin remodeller
7
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
August, 2017
10
December, 2017
5
November, 2018
2
February, 2018
October, 2018
Available data
38
bam
38
bigWig
38
fastq
36
bed narrowPeak
24
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
6
bed bed3+
Organism
38
Homo sapiens
Biosample type
26
cell line
10
in vitro differentiated cells
2
stem cell
Organ
26
liver
2
embryo
Project
38
AMP
Genome assembly (visualization)
38
hg19
34
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
38
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
shRNA RNA-seq
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
October, 2018
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
stem cell
hESC
2
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