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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1096
ChIP-seq
957
total RNA-seq
291
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
Assay category
1153
Transcription
1096
DNA binding
501
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
736
histone modification
735
histone
375
narrow histone mark
359
broad histone mark
222
control
140
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
469
February, 2021
352
August, 2017
271
August, 2021
242
October, 2019
193
May, 2020
162
June, 2019
July, 2018
115
May, 2019
106
February, 2023
104
May, 2021
87
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
47
September, 2023
40
May, 2024
39
February, 2018
39
March, 2020
39
November, 2019
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2018
1
August, 2022
Available data
1977
bam
1819
bigWig
1099
bed narrowPeak
998
tsv
577
bigBed narrowPeak
512
fastq
275
tagAlign
227
bed bed3+
213
bed broadPeak
176
bigBed broadPeak
75
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
bedpe bed3+
11
hic
10
bed bed3
6
bed bedgraph
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2836
Homo sapiens
Biosample type
2566
tissue
992
primary cell
569
cell line
279
in vitro differentiated cells
9
stem cell
Organ
639
connective tissue
488
adipose tissue
388
pancreas
376
liver
314
heart
299
kidney
262
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
34
epithelium
25
spleen
23
embryo
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2748
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1905
GRCh38
1824
hg19
4
hg18
Lab
2440
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
6
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
32
missing controlled_by
Audit category:
22
inconsistent control read length
1
inconsistent assembly
assay_title!
shRNA RNA-seq
audit.ERROR.category!
inconsistent ontology term
month_released!
July, 2018
BIOSAMPLE
ASSAY
2845 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
RNA microarray
snDrop-seq
Capture-C
tissue
adipose tissue
2
382
3
3
1
liver
145
167
20
1
2
3
1
1
1
1
islet of Langerhans
71
172
68
6
1
7
4
3
1
1
4
kidney
27
49
75
64
13
6
1
1
1
heart left ventricle
35
3
2
18
3
4
1
1
1
+ See 170 more…
in vitro differentiated cells
adipocyte
67
5
8
1
1
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
hepatocyte
15
+ See 18 more…
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