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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
593
ChIP-seq
207
ATAC-seq
176
DNase-seq
4
FAIRE-seq
Assay category
593
DNA binding
387
DNA accessibility
Target of assay
518
histone modification
517
histone
264
narrow histone mark
253
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
162
June, 2019
149
October, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
19
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1903
bam
1769
bigWig
1073
tsv
980
bed narrowPeak
560
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
974
Homo sapiens
Biosample type
980
tissue
383
cell line
270
primary cell
119
in vitro differentiated cells
2
stem cell
Organ
190
brain
173
heart
153
kidney
123
pancreas
113
liver
100
blood vessel
100
vasculature
91
limb
62
artery
50
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
12
adipose tissue
12
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
978
AMP
2
T1D
Genome assembly (visualization)
879
GRCh38
773
hg19
Lab
838
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
shRNA RNA-seq
audit.ERROR.category!
inconsistent ontology term
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
980 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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