Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
1
whole genome sequencing assay
Assay category
64
DNA accessibility
1
DNA sequencing
Date released
65
August, 2021
Available data
3180
bam
2977
bigWig
1754
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
65
Homo sapiens
Biosample type
64
tissue
1
cell line
Organ
64
kidney
1
liver
Project
65
AMP
Genome assembly (visualization)
64
GRCh38
Lab
64
Katalin Susztak, Upenn
1
Bing Ren, UCSD
assay_title!
shRNA RNA-seq
audit.ERROR.category!
inconsistent ontology term
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
65 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
whole genome sequencing assay
tissue
kidney
64
cell line
HepG2
1
Download