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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
42
ChIP-seq
2
ATAC-seq
Assay category
208
DNA accessibility
42
DNA binding
Target of assay
40
histone
40
histone modification
25
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
November, 2017
41
August, 2017
9
November, 2018
9
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2922
bam
2759
bigWig
1600
tsv
1466
bed narrowPeak
955
fastq
725
bigBed narrowPeak
316
tagAlign
259
bed bed3+
250
bed broadPeak
221
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
244
Homo sapiens
Biosample type
205
tissue
43
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
36
limb
33
brain
30
heart
21
pancreas
18
epithelium
18
ureter
13
vasculature
11
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
250
AMP
Genome assembly (visualization)
226
hg19
225
GRCh38
Lab
248
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
2
inconsistent assembly
assay_title!
shRNA RNA-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
award.project!
LungMap
month_released!
November, 2017
BIOSAMPLE
ASSAY
250 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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