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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
208
DNase-seq
25
ATAC-seq
5
FAIRE-seq
Assay category
408
DNA binding
238
DNA accessibility
Target of assay
403
transcription factor
379
histone
histone modification
235
broad histone mark
144
narrow histone mark
91
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
239
November, 2017
191
June, 2019
73
November, 2018
31
December, 2017
30
December, 2018
15
October, 2018
14
January, 2019
14
September, 2018
11
August, 2017
10
October, 2019
5
April, 2019
5
May, 2019
5
September, 2017
2
July, 2019
1
November, 2020
Available data
2395
bam
2109
bigWig
1463
tsv
912
bed narrowPeak
883
fastq
646
bigBed narrowPeak
256
bed broadPeak
254
bigBed broadPeak
231
bed bed3+
158
txt
64
xls
63
tagAlign
36
bed bedMethyl
36
bigBed bedMethyl
16
hic
13
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
1
bedpe
1
vcf
Organism
646
Homo sapiens
Biosample type
335
cell line
249
tissue
62
primary cell
in vitro differentiated cells
Organ
321
liver
82
kidney
53
blood
53
bodily fluid
45
epithelium
42
pancreas
38
heart
36
brain
36
limb
33
musculature of body
18
ureter
17
vasculature
16
connective tissue
14
blood vessel
9
adipose tissue
7
spleen
5
artery
5
eye
3
vein
2
nerve
Project
646
AMP
Genome assembly (visualization)
619
hg19
605
GRCh38
Lab
646
AMP-T2D consortium
Audit category:
28
inconsistent control
7
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
assay_title!
shRNA RNA-seq
award.project!
HPAP
biosample_type!
in vitro differentiated cells
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
646 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
280
GM12878
53
Panc1
1
glomerular visceral epithelial cell
1
tissue
liver
33
2
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 43 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
cardiac fibroblast
1
3
pancreatic ductal cell
4
+ See 22 more…
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