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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
416
total RNA-seq
75
ChIP-seq
34
ATAC-seq
6
WGBS
6
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
418
Transcription
75
DNA binding
34
DNA accessibility
6
DNA methylation
Target of assay
34
histone
34
histone modification
24
control
20
broad histone mark
17
transcription factor
14
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
10
July, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
443
bam
426
bigWig
404
tsv
44
fastq
43
bed narrowPeak
13
bigBed narrowPeak
9
bed bed3+
8
tagAlign
6
bed broadPeak
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
539
Homo sapiens
Biosample type
539
tissue
primary cell
1
in vitro differentiated cells
Organ
716
liver
642
connective tissue
593
pancreas
487
adipose tissue
353
heart
250
kidney
238
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
118
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
540
AMP
Genome assembly (visualization)
449
hg19
420
GRCh38
Lab
540
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
shRNA RNA-seq
biosample_type!
primary cell
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
540 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
omental fat pad
5
11
1
1
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in vitro differentiated cells
white fat cell
1
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