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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
total RNA-seq
37
ChIP-seq
3
ATAC-seq
2
DNase-seq
2
WGBS
2
small RNA-seq
Assay category
396
Transcription
37
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
23
October, 2018
17
August, 2017
10
July, 2019
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
440
bam
423
bigWig
400
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
440
Homo sapiens
Biosample type
440
tissue
primary cell
Organ
669
liver
557
connective tissue
495
pancreas
440
adipose tissue
226
brain
199
heart
153
blood vessel
153
vasculature
114
limb
113
kidney
100
artery
75
epithelium
66
bone element
60
blood
60
bodily fluid
44
musculature of body
42
nerve
36
embryo
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
0
gonad
Project
440
AMP
Genome assembly (visualization)
421
GRCh38
419
hg19
Lab
440
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
shRNA RNA-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
440 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
2
1
white adipose tissue
12
visceral abdominal adipose tissue
3
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