Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1150
total RNA-seq
593
ChIP-seq
293
ATAC-seq
182
single cell RNA-seq
87
RNA microarray
28
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
12
small RNA-seq
10
RRBS
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
DNase-seq
Assay category
1344
Transcription
593
DNA binding
322
DNA accessibility
37
DNA methylation
20
3D chromatin structure
Target of assay
320
histone modification
319
histone
199
control
182
narrow histone mark
136
broad histone mark
76
transcription factor
17
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
571
February, 2021
329
August, 2017
271
August, 2021
193
May, 2020
172
May, 2021
120
July, 2018
115
October, 2019
110
February, 2023
66
May, 2022
65
July, 2019
47
September, 2023
46
March, 2020
45
November, 2019
41
December, 2017
40
May, 2024
39
February, 2018
29
October, 2018
19
April, 2020
19
May, 2019
16
April, 2019
15
May, 2023
13
February, 2020
9
November, 2018
8
January, 2021
7
October, 2017
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
December, 2018
4
November, 2020
1
August, 2018
1
August, 2022
1
January, 2019
Available data
1972
bam
1829
bigWig
1184
tsv
924
bed narrowPeak
506
fastq
bigBed narrowPeak
203
bed bed3+
178
bed broadPeak
160
tagAlign
160
txt
150
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
17
bedpe bed3+
15
hic
9
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
2441
Homo sapiens
Biosample type
2067
tissue
969
primary cell
377
in vitro differentiated cells
306
cell line
10
stem cell
Organ
631
connective tissue
479
adipose tissue
446
pancreas
313
liver
226
heart
212
kidney
158
bone element
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
29
embryo
25
epithelium
20
lung
17
nerve
16
skeleton
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2347
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1466
GRCh38
1453
hg19
4
hg18
Lab
2038
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
202
inconsistent ontology term
11
audit script error
Audit category:
28
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
shRNA RNA-seq
files.file_type!
bigBed narrowPeak
organ_slims!
brain
BIOSAMPLE
ASSAY
2444 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
DNase-seq
tissue
islet of Langerhans
292
71
67
6
4
7
3
1
4
adipose tissue
382
1
2
1
3
liver
167
107
20
1
1
3
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
+ See 83 more…
in vitro differentiated cells
adipocyte
5
67
6
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
See all biosamples
Download