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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
27
DNase-seq
4
ATAC-seq
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
32
DNA accessibility
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
85
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
3
July, 2019
2
November, 2018
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
242
Homo sapiens
Biosample type
242
tissue
18
primary cell
0
in vitro differentiated cells
Organ
287
kidney
242
brain
233
pancreas
222
liver
202
heart
182
connective tissue
119
blood vessel
119
vasculature
115
limb
100
bone element
90
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
34
epithelium
24
spleen
23
embryo
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
242
AMP
Genome assembly (visualization)
194
GRCh38
134
hg19
Lab
242
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
shRNA RNA-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
242 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
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