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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
601
ChIP-seq
227
ATAC-seq
176
DNase-seq
3
FAIRE-seq
Assay category
601
DNA binding
406
DNA accessibility
Target of assay
516
histone
516
histone modification
270
narrow histone mark
246
broad histone mark
85
transcription factor
27
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
163
June, 2019
153
October, 2019
August, 2017
93
May, 2019
89
August, 2021
70
December, 2017
65
April, 2019
65
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
27
May, 2020
25
November, 2019
17
November, 2018
16
February, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
5
May, 2021
3
December, 2018
2
March, 2020
Available data
1974
bam
1805
bigWig
1118
tsv
1007
bed narrowPeak
555
bigBed narrowPeak
289
fastq
205
tagAlign
197
bed bed3+
187
bed broadPeak
176
bigBed broadPeak
160
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1007
Homo sapiens
Biosample type
918
tissue
404
cell line
262
primary cell
89
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
109
liver
100
blood vessel
100
vasculature
93
pancreas
92
limb
62
artery
38
musculature of body
30
epithelium
30
eye
27
nerve
18
ureter
14
embryo
14
spleen
12
connective tissue
10
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
1005
AMP
2
T1D
Genome assembly (visualization)
923
GRCh38
799
hg19
Lab
861
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
27
inconsistent control
17
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
12
inconsistent control read length
assay_title!
shRNA RNA-seq
month_released!
August, 2017
BIOSAMPLE
ASSAY
1007 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
20
64
13
1
liver
65
20
2
coronary artery
3
36
2
left cardiac atrium
40
1
islet of Langerhans
2
37
+ See 129 more…
in vitro differentiated cells
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
primitive gut cell
6
+ See 13 more…
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