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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
884
total RNA-seq
798
ChIP-seq
238
ATAC-seq
176
single cell RNA-seq
170
DNase-seq
87
RNA microarray
29
pCHi-C
17
snATAC-seq
16
Hi-C
14
WGBS
14
small RNA-seq
4
GRO-seq
4
RRBS
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
Assay category
1074
Transcription
798
DNA binding
427
DNA accessibility
18
DNA methylation
16
3D chromatin structure
Target of assay
545
histone
545
histone modification
298
narrow histone mark
247
broad histone mark
166
control
87
transcription factor
27
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
571
February, 2021
269
August, 2021
247
October, 2019
August, 2017
193
May, 2020
159
June, 2019
132
May, 2021
113
May, 2019
93
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
71
July, 2019
47
September, 2023
42
May, 2022
40
May, 2024
39
February, 2018
39
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
January, 2018
6
November, 2019
5
December, 2019
1
August, 2018
Available data
1669
bam
1560
bigWig
932
tsv
914
bed narrowPeak
507
bigBed narrowPeak
203
fastq
202
tagAlign
189
bed bed3+
179
bed broadPeak
170
bigBed broadPeak
154
txt
64
xls
14
bed bedMethyl
14
bedpe bed3+
14
bigBed bedMethyl
12
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
tagAlign bed3+
Organism
2456
Homo sapiens
Biosample type
2135
tissue
724
primary cell
569
cell line
323
in vitro differentiated cells
10
stem cell
Organ
519
connective tissue
432
adipose tissue
pancreas
322
liver
314
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2391
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1652
GRCh38
1538
hg19
4
hg18
Lab
2115
AMP-T2D consortium
142
Katalin Susztak, Upenn
48
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
206
inconsistent ontology term
27
inconsistent control
10
audit script error
Audit category:
5
missing controlled_by
Audit category:
11
inconsistent control read length
assay_title!
shRNA RNA-seq
month_released!
August, 2017
organ_slims!
pancreas
BIOSAMPLE
ASSAY
2458 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
small RNA-seq
GRO-seq
RRBS
snDrop-seq
Capture-C
FAIRE-seq
tissue
adipose tissue
382
3
1
liver
167
97
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
1
4
1
+ See 171 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
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