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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1167
total RNA-seq
838
ChIP-seq
302
ATAC-seq
182
single cell RNA-seq
179
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
3
snDrop-seq
2
Capture-C
2
MeRIP-seq
Assay category
1365
Transcription
838
DNA binding
513
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
710
histone modification
709
histone
368
narrow histone mark
340
broad histone mark
control
128
transcription factor
28
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
315
August, 2017
264
August, 2021
223
October, 2019
170
May, 2020
166
May, 2021
163
June, 2019
120
July, 2018
111
February, 2023
93
May, 2019
77
July, 2019
71
December, 2017
70
November, 2017
66
April, 2019
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
October, 2018
40
May, 2024
31
February, 2018
25
February, 2020
23
November, 2018
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2018
6
January, 2019
5
December, 2019
5
March, 2019
3
December, 2018
2
November, 2020
1
August, 2018
1
August, 2022
Available data
1986
bigWig
1956
bam
1207
tsv
1071
bed narrowPeak
533
bigBed narrowPeak
398
fastq
222
bed bed3+
216
tagAlign
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2894
Homo sapiens
Biosample type
2545
tissue
1051
primary cell
578
cell line
357
in vitro differentiated cells
9
stem cell
Organ
607
connective tissue
460
adipose tissue
438
pancreas
329
liver
298
heart
293
kidney
240
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
35
epithelium
32
nerve
22
embryo
20
lung
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2805
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2071
GRCh38
1999
hg19
4
hg18
Lab
2503
AMP-T2D consortium
142
Katalin Susztak, Upenn
94
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
204
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
32
missing controlled_by
Audit category:
22
inconsistent control read length
1
inconsistent assembly
assay_title!
shRNA RNA-seq
month_released!
October, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
2902 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
MeRIP-seq
tissue
islet of Langerhans
292
58
68
6
1
4
7
3
1
1
2
adipose tissue
382
1
3
1
3
liver
167
102
20
1
2
1
3
1
1
1
kidney
49
21
75
64
13
6
1
1
1
bone element
84
+ See 175 more…
in vitro differentiated cells
adipocyte
5
59
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
34
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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