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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
236
ChIP-seq
177
total RNA-seq
40
DNase-seq
29
ATAC-seq
5
Hi-C
5
WGBS
3
small RNA-seq
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
236
DNA binding
181
Transcription
69
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Target of assay
131
histone modification
130
histone
66
broad histone mark
64
control
64
narrow histone mark
41
transcription factor
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
75
October, 2019
63
December, 2017
54
August, 2017
40
May, 2022
32
June, 2019
13
July, 2019
7
February, 2021
7
May, 2019
7
November, 2018
4
February, 2020
3
March, 2020
Available data
417
bam
370
bigWig
219
bed narrowPeak
161
tsv
147
bigBed narrowPeak
98
fastq
70
tagAlign
42
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hic
Organism
498
Homo sapiens
Biosample type
483
tissue
401
cell line
15
in vitro differentiated cells
14
primary cell
Organ
644
connective tissue
508
pancreas
489
adipose tissue
376
liver
314
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
498
AMP
Genome assembly (visualization)
378
hg19
348
GRCh38
Lab
458
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
498 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
small RNA-seq
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
145
167
2
20
1
3
1
1
1
1
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
right lobe of liver
10
3
2
1
1
2
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in vitro differentiated cells
hepatocyte
15
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