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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
21
ATAC-seq
1
DNase-seq
Assay category
94
DNA binding
22
DNA accessibility
Target of assay
62
histone
62
histone modification
32
narrow histone mark
32
transcription factor
29
broad histone mark
6
RNA binding protein
3
chromatin remodeller
Date released
43
August, 2017
34
December, 2017
25
August, 2021
February, 2018
5
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
252
bam
228
bigWig
116
bed narrowPeak
116
tsv
102
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
116
Homo sapiens
Biosample type
984
tissue
404
cell line
295
primary cell
116
in vitro differentiated cells
2
stem cell
Organ
45
connective tissue
18
epithelium
14
liver
8
embryo
2
pancreas
Project
116
AMP
Genome assembly (visualization)
115
hg19
112
GRCh38
Lab
112
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
15
inconsistent control read length
assay_title!
shRNA RNA-seq
month_released!
February, 2018
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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