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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
total RNA-seq
3
DNase-seq
2
ChIP-seq
1
RRBS
Assay category
4
Transcription
3
DNA accessibility
2
DNA binding
1
DNA methylation
Target of assay
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
transcription factor
Date released
5
July, 2019
5
June, 2019
Available data
9
bam
9
bigWig
5
bed narrowPeak
5
bigBed narrowPeak
4
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
10
Homo sapiens
Biosample type
285
tissue
60
cell line
10
primary cell
1
in vitro differentiated cells
Organ
380
epithelium
334
pancreas
35
connective tissue
31
kidney
31
vasculature
27
blood vessel
20
vein
13
liver
12
brain
12
musculature of body
10
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
10
AMP
Genome assembly (visualization)
9
GRCh38
9
hg19
Lab
10
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
shRNA RNA-seq
target.investigated_as!
control
transcription factor
BIOSAMPLE
ASSAY
10 results
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total RNA-seq
DNase-seq
ChIP-seq
RRBS
primary cell
cardiac fibroblast
3
2
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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