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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
562
ChIP-seq
Assay category
562
DNA binding
Target of assay
539
histone modification
538
histone
291
narrow histone mark
247
broad histone mark
165
control
90
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
168
October, 2019
125
August, 2017
May, 2019
70
November, 2017
64
April, 2019
41
October, 2018
40
May, 2024
27
May, 2020
12
October, 2017
7
December, 2017
6
January, 2019
2
March, 2020
Available data
455
bigWig
452
bed narrowPeak
395
bam
239
bigBed narrowPeak
186
tagAlign
88
fastq
35
bed broadPeak
14
bed bed3+
1
tagAlign bed3+
Organism
556
Homo sapiens
Biosample type
562
tissue
243
primary cell
123
in vitro differentiated cells
103
cell line
2
stem cell
Organ
159
brain
90
heart
80
pancreas
71
liver
43
limb
38
connective tissue
37
adipose tissue
24
nerve
21
kidney
19
musculature of body
18
artery
18
blood vessel
18
vasculature
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
560
AMP
2
T1D
Genome assembly (visualization)
428
GRCh38
366
hg19
Lab
522
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
shRNA RNA-seq
month_released!
May, 2019
BIOSAMPLE
ASSAY
562 results
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Clear Filters
ChIP-seq
tissue
liver
65
islet of Langerhans
53
left cardiac atrium
40
subcutaneous abdominal adipose tissue
31
heart left ventricle
27
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