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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ATAC-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
4
DNA accessibility
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
February, 2021
3
February, 2023
3
November, 2017
1
October, 2019
Available data
2820
bam
2618
bigWig
1794
bed narrowPeak
1313
fastq
1042
bigBed narrowPeak
tsv
390
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
3
cell line
3
in vitro differentiated cells
1
primary cell
Organ
3
liver
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
7
AMP
Genome assembly (visualization)
7
hg19
Lab
4
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
shRNA RNA-seq
files.file_type!
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
7 results
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ATAC-seq
ChIP-seq
FAIRE-seq
cell line
HepG2
3
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
endothelial cell of umbilical vein
1
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