Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
31
ChIP-seq
3
ATAC-seq
Assay category
190
DNA accessibility
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
283
August, 2021
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
219
bam
210
bed narrowPeak
210
bigBed narrowPeak
210
bigWig
188
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
1
fastq
Organism
221
Homo sapiens
Biosample type
166
tissue
55
primary cell
Organ
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
20
epithelium
18
connective tissue
18
ureter
7
eye
7
pancreas
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
221
AMP
Genome assembly (visualization)
211
GRCh38
188
hg19
Lab
218
AMP-T2D consortium
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
26
inconsistent ontology term
assay_title!
shRNA RNA-seq
lab.title!
Bing Ren, UCSD
month_released!
December, 2017
BIOSAMPLE
ASSAY
221 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
See all biosamples
Download