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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
Available data
33
bed narrowPeak
6
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
60
Homo sapiens
Biosample type
56
tissue
4
primary cell
Organ
660
pancreas
649
connective tissue
467
adipose tissue
342
liver
326
kidney
309
heart
268
epithelium
255
brain
159
bone element
150
vasculature
145
blood vessel
105
limb
90
musculature of body
68
artery
60
eye
32
nerve
22
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
60
AMP-T2D consortium
assay_title!
siRNA RNA-seq
award.project!
HPAP
biosample_type!
cell line
target.investigated_as!
control
BIOSAMPLE
ASSAY
60 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
1
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