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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
9
ATAC-seq
9
total RNA-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Hi-C
2
HiChIP
1
MPRA
1
shRNA RNA-seq
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
71
DNA binding
10
Transcription
9
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
65
control
5
transcription factor
2
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
1
recombinant protein
Date released
47
November, 2017
20
August, 2021
13
February, 2021
10
October, 2019
5
February, 2023
4
March, 2020
4
November, 2018
3
January, 2019
1
December, 2018
1
March, 2023
May, 2020
1
October, 2022
Available data
531
bam
bigWig
427
fastq
389
bed narrowPeak
354
bigBed narrowPeak
83
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
107
Homo sapiens
Biosample type
967
tissue
243
primary cell
131
in vitro differentiated cells
109
cell line
7
stem cell
Organ
68
liver
36
pancreas
epithelium
10
artery
10
blood vessel
10
heart
10
vasculature
7
kidney
6
blood
6
bodily fluid
1
mammary gland
Project
103
AMP
5
T1D
1
community
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
83
AMP-T2D consortium
20
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
1
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
assay_title!
siRNA RNA-seq
files.file_type!
bigWig
month_released!
May, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
ATAC-seq
total RNA-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
MPRA
shRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
52
1
9
2
1
2
1
smooth muscle cell of the coronary artery
2
8
Panc1
7
GM12878
6
EndoC_BH1
3
2
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