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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
91
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
siRNA RNA-seq
Assay category
112
DNA binding
92
Transcription
31
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
transcription factor
89
recombinant protein
76
control
58
RNA binding protein
34
histone
34
histone modification
24
chromatin remodeller
18
broad histone mark
16
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
91
February, 2021
74
November, 2017
August, 2021
23
October, 2019
21
May, 2021
15
November, 2019
11
March, 2020
January, 2019
6
February, 2023
6
November, 2020
4
November, 2018
3
December, 2018
1
January, 2018
1
March, 2023
1
May, 2020
1
October, 2022
Available data
216
bam
149
bigWig
97
tsv
81
fastq
48
bed narrowPeak
26
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
15
tagAlign
3
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
255
Homo sapiens
Biosample type
2447
tissue
1074
primary cell
303
in vitro differentiated cells
258
cell line
10
stem cell
Organ
89
pancreas
79
liver
76
epithelium
62
artery
62
blood vessel
62
heart
62
vasculature
10
kidney
6
blood
6
bodily fluid
1
mammary gland
Project
248
AMP
9
T1D
1
community
Genome assembly (visualization)
160
hg19
141
GRCh38
Lab
246
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
1
Anna Gloyn, Oxford
Audit category:
81
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
assay_title!
siRNA RNA-seq
month_released!
August, 2021
January, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
258 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
cell line
EndoC_BH1
14
33
19
6
3
1
2
1
HepG2
74
1
2
1
1
smooth muscle cell of the coronary artery
2
52
8
Panc1
13
1
1
GM12878
5
1
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