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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
whole genome sequencing assay
Assay category
82
DNA accessibility
74
Transcription
39
DNA binding
3
3D chromatin structure
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
665
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
279
October, 2019
206
August, 2021
198
June, 2019
152
February, 2023
120
July, 2018
115
May, 2019
92
July, 2019
87
November, 2018
86
May, 2022
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
45
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
12
May, 2023
11
September, 2018
10
April, 2020
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
103
bed narrowPeak
64
xls
49
txt
45
bam
44
bigWig
25
tsv
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
205
Homo sapiens
Biosample type
123
tissue
42
in vitro differentiated cells
41
cell line
Organ
122
kidney
34
liver
8
embryo
epithelium
5
connective tissue
4
pancreas
1
adipose tissue
Project
206
AMP
Genome assembly (visualization)
102
GRCh38
57
hg19
Lab
120
Katalin Susztak, Upenn
47
AMP-T2D consortium
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
whole genome sequencing assay
organ_slims!
epithelium
BIOSAMPLE
ASSAY
206 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
18
2
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
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