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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
single cell RNA-seq
31
ChIP-seq
16
total RNA-seq
3
ATAC-seq
Assay category
189
DNA accessibility
31
DNA binding
16
Transcription
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
313
October, 2019
311
February, 2021
217
June, 2019
212
August, 2021
203
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
94
December, 2017
86
November, 2018
80
April, 2019
78
July, 2019
72
September, 2018
63
March, 2020
60
November, 2019
53
October, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
7
December, 2019
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2022
Available data
217
bam
212
bigWig
209
bed narrowPeak
209
bigBed narrowPeak
186
bed bed3+
186
bed broadPeak
186
bigBed broadPeak
19
fastq
Organism
236
Homo sapiens
Biosample type
162
tissue
74
primary cell
Organ
81
kidney
43
musculature of body
39
epithelium
35
heart
32
limb
30
brain
23
pancreas
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
adipose tissue
Project
217
AMP
19
HPAP
Genome assembly (visualization)
212
GRCh38
186
hg19
Lab
217
AMP-T2D consortium
19
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
assay_title!
single cell RNA-seq
small RNA-seq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
236 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 33 more…
primary cell
pancreatic alpha cell
15
2
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
+ See 19 more…
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