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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
120
total RNA-seq
94
ChIP-seq
32
ATAC-seq
snATAC-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
120
Transcription
94
DNA binding
33
DNA accessibility
7
DNA methylation
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
72
September, 2018
58
August, 2017
19
September, 2020
9
November, 2017
7
August, 2020
6
February, 2021
5
September, 2017
2
October, 2018
Available data
510
bigWig
505
bam
292
bed narrowPeak
254
fastq
170
tsv
106
bigBed narrowPeak
100
tagAlign
80
zippedFastqFolder
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
254
Homo sapiens
Biosample type
427
cell line
371
tissue
254
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
189
pancreas
172
epithelium
9
brain
6
vasculature
3
blood vessel
Project
146
AMP
108
HPAP
Genome assembly (visualization)
137
GRCh38
134
hg19
Lab
146
AMP-T2D consortium
108
Klaus Kaestner, Upenn
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
snATAC-seq
organ_slims!
eye
BIOSAMPLE
ASSAY
254 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
52
13
13
6
pancreatic beta cell
21
13
10
exocrine cell
39
pancreatic endocrine cell
23
pancreatic ductal cell
4
13
4
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