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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
44
ATAC-seq
11
ChIP-seq
2
DNase-seq
single cell RNA-seq
Assay category
46
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
35
February, 2023
14
February, 2021
5
May, 2019
2
June, 2019
1
July, 2019
Available data
53
bed narrowPeak
22
bam
10
bigWig
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
57
Homo sapiens
Biosample type
43
tissue
14
cell line
Organ
600
liver
469
pancreas
323
epithelium
266
brain
230
kidney
228
heart
206
connective tissue
169
vasculature
163
blood vessel
limb
97
bone element
93
adipose tissue
89
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
53
GRCh38
18
hg19
Lab
57
AMP-T2D consortium
assay_title!
single cell RNA-seq
total RNA-seq
audit.ERROR.category!
inconsistent replicate
organ_slims!
limb
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
tissue
coronary artery
36
5
2
cell line
smooth muscle cell of the coronary artery
8
6
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