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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
single cell RNA-seq
3
total RNA-seq
1
GRO-seq
1
WGBS
1
pCHi-C
Assay category
30
DNA binding
3
Transcription
1
DNA methylation
Target of assay
26
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
11
May, 2019
10
October, 2019
4
December, 2017
3
February, 2018
3
February, 2020
2
February, 2021
1
January, 2018
1
July, 2019
1
March, 2020
Available data
31
bam
8
fastq
4
tsv
2
tagAlign
1
bigWig
Organism
36
Homo sapiens
Biosample type
21
tissue
8
in vitro differentiated cells
5
primary cell
2
cell line
Organ
272
pancreas
197
epithelium
160
liver
92
connective tissue
89
bone element
79
kidney
63
adipose tissue
58
brain
28
blood vessel
28
heart
28
vasculature
27
eye
25
limb
21
musculature of body
14
blood
14
bodily fluid
12
nerve
11
artery
11
lung
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
GRCh38
hg19
1
hg18
Lab
36
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
single cell RNA-seq
assembly!
GRCh38
hg19
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
total RNA-seq
GRO-seq
WGBS
pCHi-C
tissue
tibial artery
5
1
aorta
2
1
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
primary cell
endothelial cell of umbilical vein
5
cell line
smooth muscle cell of the coronary artery
2
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