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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
4
WGBS
4
total RNA-seq
3
ATAC-seq
2
pCHi-C
single cell RNA-seq
1
RNA microarray
Assay category
64
DNA binding
4
DNA methylation
4
Transcription
3
DNA accessibility
Target of assay
33
control
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
Date released
41
August, 2017
18
October, 2018
6
October, 2019
4
February, 2020
2
February, 2021
2
May, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
Available data
28
bam
21
fastq
10
tagAlign
5
tsv
3
bigWig
2
bed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed narrowPeak
Organism
77
Homo sapiens
Biosample type
75
tissue
2
cell line
1
in vitro differentiated cells
Organ
308
pancreas
259
liver
230
epithelium
118
connective tissue
93
bone element
85
kidney
69
brain
67
adipose tissue
55
eye
42
musculature of body
39
vasculature
37
blood vessel
34
heart
26
limb
15
blood
15
bodily fluid
12
nerve
11
artery
11
lung
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
GRCh38
519
hg19
Lab
78
AMP-T2D consortium
assay_title!
single cell RNA-seq
assembly!
GRCh38
month_released!
March, 2019
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
3
1
tibial artery
5
1
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cell line
smooth muscle cell of the coronary artery
2
in vitro differentiated cells
white fat cell
1
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