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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
single cell RNA-seq
48
snATAC-seq
47
WGBS
32
ChIP-seq
9
DNase-seq
1
DNAme array
1
Hi-C
Assay category
173
DNA accessibility
95
Transcription
48
DNA methylation
32
DNA binding
1
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
101
May, 2022
88
February, 2023
57
May, 2020
33
February, 2021
19
September, 2020
15
June, 2019
12
August, 2017
8
October, 2019
7
August, 2020
6
May, 2021
1
August, 2021
1
March, 2023
1
May, 2019
Available data
147
fastq
101
zippedFastqFolder
35
bam
18
tsv
17
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
1
hic
1
tagAlign
Organism
349
Homo sapiens
Biosample type
810
tissue
349
primary cell
120
cell line
95
in vitro differentiated cells
7
stem cell
Organ
179
epithelium
161
pancreas
11
kidney
6
blood vessel
6
vasculature
5
vein
4
connective tissue
3
heart
2
musculature of body
1
eye
1
liver
Project
236
HPAP
112
AMP
T1D
1
ITG
Genome assembly (visualization)
hg19
256
GRCh38
Lab
236
Klaus Kaestner, Upenn
112
AMP-T2D consortium
1
ITG
Audit category:
27
audit script error
11
inconsistent ontology term
assay_title!
single cell RNA-seq
assembly!
hg19
award.project!
T1D
month_released!
November, 2018
BIOSAMPLE
ASSAY
349 results
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ATAC-seq
total RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
DNAme array
Hi-C
primary cell
pancreatic alpha cell
29
42
31
6
pancreatic beta cell
16
11
16
6
Langerhans cell
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
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