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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
single cell RNA-seq
138
ATAC-seq
132
total RNA-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
25
pCHi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
DNase-seq
1
Hi-C
Assay category
360
DNA binding
166
DNA accessibility
132
Transcription
28
DNA methylation
1
3D chromatin structure
Target of assay
189
histone
189
histone modification
167
control
105
broad histone mark
84
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
122
August, 2021
104
August, 2017
87
February, 2021
76
November, 2017
62
October, 2019
61
February, 2023
40
May, 2024
29
October, 2018
26
May, 2022
23
May, 2020
22
February, 2020
22
March, 2020
21
May, 2019
15
April, 2019
12
December, 2017
12
July, 2019
11
May, 2023
10
April, 2020
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
2
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
241
bam
207
bed narrowPeak
143
txt
133
tagAlign
124
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
52
tsv
17
bed broadPeak
bed bed3+
16
bigBed broadPeak
15
bed bedMethyl
15
bigBed bedMethyl
1
bedpe bed3+
Organism
803
Homo sapiens
Biosample type
806
tissue
366
primary cell
132
cell line
95
in vitro differentiated cells
7
stem cell
Organ
142
kidney
112
brain
105
heart
92
liver
90
pancreas
88
bone element
65
connective tissue
64
adipose tissue
57
blood vessel
57
vasculature
44
artery
26
eye
limb
20
musculature of body
12
nerve
11
lung
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
767
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
1589
GRCh38
hg19
Lab
564
AMP-T2D consortium
130
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
3
audit script error
Audit category:
1
missing controlled_by
assay_title!
single cell RNA-seq
assembly!
hg19
files.file_type!
bed bed3+
organ_slims!
limb
BIOSAMPLE
ASSAY
806 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
MeRIP-seq
snDrop-seq
RRBS
DNase-seq
Hi-C
tissue
kidney
7
75
49
6
islet of Langerhans
39
26
32
7
4
4
1
liver
62
20
3
1
bone element
84
left cardiac atrium
40
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