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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
23
ChIP-seq
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
Assay category
36
DNA accessibility
23
DNA binding
3
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
3
February, 2020
2
February, 2021
2
July, 2019
1
June, 2019
March, 2020
Available data
36
bed narrowPeak
26
bam
3
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
64
Homo sapiens
Biosample type
56
tissue
6
primary cell
2
cell line
Organ
285
pancreas
213
epithelium
164
liver
159
kidney
120
brain
109
heart
93
connective tissue
89
bone element
64
adipose tissue
64
blood vessel
64
vasculature
46
artery
27
eye
26
limb
21
musculature of body
14
blood
bodily fluid
12
nerve
10
lung
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
64
AMP
Genome assembly (visualization)
190
GRCh38
hg19
Lab
64
AMP-T2D consortium
assay_title!
single cell RNA-seq
assembly!
hg19
month_released!
March, 2020
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
DNase-seq
tissue
coronary artery
35
2
1
tibial artery
5
1
aorta
2
2
ascending aorta
3
1
thoracic aorta
4
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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